Timothy (Jul 01 2022 at 07:22): Timothy (Jul 01 2022 at 07:22):Hi, I'm trying to use Julia on a supercomputer that makes Julia available via the module system, and I think I've set JULIA_DEPOT_PATH appropriately (/data/agpdev/timothy/.julia:/data/agpdev/sw/julia/1.7.3/usr/local/share/julia:/data/agpdev/sw/julia/1.7.3/usr/share/julia) however I don't seem to be able to Pkg.add anything, consistently seeing a UUID key error.
(@v1.7) pkg> add ClusterManagers
Updating registry at `/data/agpdev/timothy/.julia/registries/General.toml`
Resolving package versions...
ERROR: KeyError: key UUID("44cfe95a-1eb2-52ea-b672-e2afdf69b78f") not found
Stacktrace:
[1] getindex
@ ./dict.jl:481 [inlined]
[2] deps_graph(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, uuid_to_name::Dict{Base.UUID, String}, reqs::Dict{Base.UUID, Pkg.Versions.VersionSpec}, fixed::Dict{Base.UUID, Pkg.Resolve.Fixed}, julia_version::VersionNumber)
@ Pkg.Operations /data/tki_agpdev/sw/julia/1.7.3/usr/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:408
[3] resolve_versions!
...
Might anyone have ideas/suggestions?
Sukera (Jul 01 2022 at 07:30):can you try ]registry rm General followed by ]registry add General?
Sukera (Jul 01 2022 at 07:30):what have you set JULIA_DEPOT_PATH to?
Timothy (Jul 01 2022 at 07:32):Removing/re-adding General didn't help, and I have JULIA_DEPOT_PATH set to /data/agpdev/timothy/.julia:/data/agpdev/sw/julia/1.7.3/usr/local/share/julia:/data/agpdev/sw/julia/1.7.3/usr/share/julia (as per my original post).
Sukera (Jul 01 2022 at 07:36):the error is definitely odd, since that's the UUID of Pkg
Sukera (Jul 01 2022 at 07:36):to me that suggests your module provided julia install is broken
Timothy (Jul 01 2022 at 07:40):Hmm, this is also interesting:
julia> using Pkg
ERROR: ArgumentError: Package Pkg not found in current path:
- Run `import Pkg; Pkg.add("Pkg")` to install the Pkg package.
For reference, using LinearAlgebra is fine.
Sukera (Jul 01 2022 at 07:41)::thinking:
Sukera (Jul 01 2022 at 07:42):yeah that definitely sounds like a broken install
Timothy (Jul 01 2022 at 07:42):I've just had a look at the stdlib folder, and I'm seeing a few broken symlinks...
Sukera (Jul 01 2022 at 07:43):might want to talk to the admins of that supercomputer about it, if that's intended or just broken
Timothy (Jul 01 2022 at 07:45):Yea, I'm now sending them a message. I'm guessing this could explain the error(s) I'm seeing.
Last updated: Oct 02 2023 at 04:34 UTC